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2013 UC Davis Assembly Masterclass - homepage
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Notes and materials from `Davis Masterclass on assembly <http://ivory.idyll.org/blog/2013-assembly-masterclass.html>`__ and the associated `PacBio sequence assembly workshop <http://phylogenomics.wordpress.com/2013/12/11/pacbio-sequence-assembly-workshop/>`__.

Authors: Holly Bik, C. Titus Brown, Nick Loman, Lex Nederbragt, and
Jared Simpson.

Please see :doc:`outputs/index` for our summary outputs!

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`Schedule <https://docs.google.com/document/d/1L0vdxQAYpm03RLj8jpZAOJ2PtPZK0aBZrJFgqvLlGEQ/edit>`__

`Mailing list <mailto:2013-davis-assembly@lists.idyll.org>`__

`Setting up Amazon VM <http://khmer-protocols.readthedocs.org/en/latest/amazon/index.html>`__

.. toctree::

   references
   tools
   other-links
   titus-notes
   ray-assembly
   lex-notes
   blobology
   pacbio
   genome-binning-with-concoct
   outputs/index

Other references:
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`Starting up an EC2 instance <http://khmer-protocols.readthedocs.org/en/latest/amazon/index.html>`__

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